Variant report

Variant	rs12581639
Chromosome Location	chr12:86791317-86791318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10745407	0.83[JPT][hapmap]
rs10745408	0.83[JPT][hapmap]
rs10776955	0.83[JPT][hapmap]
rs10858408	0.83[JPT][hapmap]
rs10858415	0.88[CHB][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap]
rs10858423	0.86[ASN][1000 genomes]
rs11103930	0.88[CHB][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap]
rs11830208	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs11830448	0.92[ASW][hapmap];0.94[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11835193	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12302310	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302551	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12303046	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs12319410	0.94[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319593	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12579580	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs12581912	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12582767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1493415	0.80[JPT][hapmap]
rs1628799	1.00[JPT][hapmap]
rs1698787	0.83[JPT][hapmap]
rs17013842	0.83[ASW][hapmap]
rs17013858	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17013981	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17014005	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17014008	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17014009	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17014020	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17014026	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17040806	1.00[ASW][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];0.86[ASN][1000 genomes]
rs1986602	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1986603	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1994863	1.00[JPT][hapmap]
rs2141927	1.00[ASW][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap]
rs2405793	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2405929	0.92[ASW][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2405931	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2406116	0.83[JPT][hapmap]
rs2406118	0.83[JPT][hapmap]
rs2406122	0.83[JPT][hapmap]
rs2406123	0.83[JPT][hapmap]
rs2406127	0.83[JPT][hapmap]
rs2406128	0.83[JPT][hapmap]
rs2406160	0.83[JPT][hapmap]
rs2452807	0.83[JPT][hapmap]
rs2465144	0.83[JPT][hapmap]
rs2471560	0.83[JPT][hapmap]
rs2471568	0.83[JPT][hapmap]
rs2471569	0.83[JPT][hapmap]
rs2897240	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2897274	0.94[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2897275	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2897277	0.88[CHB][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap]
rs2897278	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs4370997	0.83[JPT][hapmap]
rs4488269	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs4526834	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs4636736	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56170210	1.00[EUR][1000 genomes]
rs57977247	1.00[EUR][1000 genomes]
rs59690693	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60902071	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61359740	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950714	0.80[ASN][1000 genomes]
rs6538025	0.83[JPT][hapmap]
rs6538029	0.83[JPT][hapmap]
rs7135177	0.83[JPT][hapmap]
rs7138352	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7138786	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7301129	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs73385292	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385293	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73387865	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7953196	0.83[JPT][hapmap]
rs7953491	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7961251	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7964553	0.83[JPT][hapmap]
rs7973773	0.83[JPT][hapmap]
rs7977034	0.84[YRI][hapmap]
rs7980126	0.88[CHB][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap]
rs839104	0.83[JPT][hapmap]
rs839148	0.83[JPT][hapmap]
rs839149	0.83[JPT][hapmap]
rs839150	0.80[JPT][hapmap]
rs839151	0.83[JPT][hapmap]
rs839152	0.86[JPT][hapmap]
rs839153	0.83[JPT][hapmap]
rs839156	0.83[JPT][hapmap]
rs839157	0.83[JPT][hapmap]
rs839158	0.83[JPT][hapmap]
rs839159	0.83[JPT][hapmap]
rs839168	0.83[JPT][hapmap]
rs839170	0.82[JPT][hapmap]
rs839171	0.83[JPT][hapmap]
rs844434	0.83[JPT][hapmap]
rs844435	0.83[JPT][hapmap]
rs863395	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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