Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10874602..10877860-chr12:10887545..10890787,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000060138	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10845205	0.87[ASN][1000 genomes]
rs10845207	0.89[ASN][1000 genomes]
rs11053902	0.84[ASN][1000 genomes]
rs11053904	0.83[ASN][1000 genomes]
rs11053909	0.87[ASN][1000 genomes]
rs11053911	0.89[ASN][1000 genomes]
rs11053914	0.90[ASN][1000 genomes]
rs11053917	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11053977	0.86[AMR][1000 genomes]
rs1108542	0.89[ASN][1000 genomes]
rs11830560	0.87[ASN][1000 genomes]
rs12231922	0.90[ASN][1000 genomes]
rs12423741	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12425492	0.90[ASN][1000 genomes]
rs2083958	0.90[ASN][1000 genomes]
rs4445727	0.89[ASN][1000 genomes]
rs7133840	0.82[AMR][1000 genomes]
rs7136530	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7138223	0.90[ASN][1000 genomes]
rs73044637	0.90[ASN][1000 genomes]
rs73044645	0.86[ASN][1000 genomes]
rs7310690	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7315801	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7316817	0.82[AMR][1000 genomes]
rs7963875	0.86[ASN][1000 genomes]
rs9668997	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10886400-10892400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search: