Variant report

Variant	rs1258241
Chromosome Location	chr10:50910908-50910909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10857531	0.81[CHB][hapmap]
rs10857535	0.81[CHB][hapmap]
rs11101218	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11592068	0.81[ASN][1000 genomes]
rs1258168	0.85[CEU][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.87[YRI][hapmap];0.86[EUR][1000 genomes]
rs1258169	0.86[EUR][1000 genomes]
rs1258170	0.85[EUR][1000 genomes]
rs1258176	0.86[EUR][1000 genomes]
rs1258178	0.86[EUR][1000 genomes]
rs1258184	0.84[MEX][hapmap];0.89[MKK][hapmap];0.81[TSI][hapmap]
rs1258201	0.89[JPT][hapmap]
rs1258204	0.89[JPT][hapmap];0.82[MKK][hapmap]
rs1258243	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258245	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258246	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258247	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258249	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1258250	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1258251	0.84[EUR][1000 genomes]
rs1258252	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1258253	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1258256	0.89[CEU][hapmap];0.88[JPT][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1258258	0.85[CEU][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.88[TSI][hapmap];0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1258260	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs1258323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1258326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1258329	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1258330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1268722	0.85[CEU][hapmap];0.94[MKK][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs1268723	0.85[CEU][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];0.86[TSI][hapmap];0.87[YRI][hapmap];0.85[EUR][1000 genomes]
rs1270562	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1271629	0.81[CEU][hapmap];0.84[MEX][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs13736	0.89[JPT][hapmap]
rs1625258	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1659305	0.86[EUR][1000 genomes]
rs1720367	0.85[AMR][1000 genomes]
rs2889729	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4372365	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4838554	0.81[CHB][hapmap]
rs4838555	0.81[CHB][hapmap]
rs56948641	0.89[EUR][1000 genomes]
rs61849382	0.81[ASN][1000 genomes]
rs6537549	0.81[CHB][hapmap]
rs6537550	0.81[CHB][hapmap]
rs6816	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7088344	0.81[CHB][hapmap]
rs745836	0.87[EUR][1000 genomes]
rs745837	0.85[CEU][hapmap];0.87[YRI][hapmap];0.86[EUR][1000 genomes]
rs745838	0.85[CEU][hapmap];0.87[YRI][hapmap];0.87[EUR][1000 genomes]
rs7916489	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1037405	chr10:50800817-50940545	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv895378	chr10:50801342-50955649	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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