Variant report

Variant	rs12582690
Chromosome Location	chr12:86743596-86743597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs10431399	0.95[JPT][hapmap]
rs10506934	0.81[CEU][hapmap]
rs10735250	0.95[JPT][hapmap]
rs10745407	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10745408	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs10745416	0.95[JPT][hapmap]
rs10745419	0.89[JPT][hapmap]
rs10776955	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs10776961	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10776968	0.82[ASN][1000 genomes]
rs10776969	0.95[JPT][hapmap]
rs10776971	0.89[JPT][hapmap]
rs10776977	0.94[JPT][hapmap]
rs10858408	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10858412	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10858415	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs10858419	0.87[ASN][1000 genomes]
rs10858425	0.95[JPT][hapmap]
rs10858427	0.95[JPT][hapmap]
rs10858428	0.84[CHB][hapmap]
rs11103930	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs11103983	0.89[JPT][hapmap]
rs11830208	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs12303046	0.83[CHB][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap]
rs12304593	0.90[EUR][1000 genomes]
rs12306280	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12315617	0.81[CEU][hapmap]
rs12316480	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs12317113	0.95[JPT][hapmap]
rs12578669	0.95[JPT][hapmap]
rs1493415	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs1698787	0.89[JPT][hapmap]
rs17288772	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs17289052	0.81[CEU][hapmap];0.94[EUR][1000 genomes]
rs17289178	0.81[CEU][hapmap]
rs17359446	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs17367374	0.81[CEU][hapmap];0.94[EUR][1000 genomes]
rs17367869	0.81[CEU][hapmap];0.94[EUR][1000 genomes]
rs1922742	0.95[JPT][hapmap]
rs1922749	0.95[JPT][hapmap]
rs1955399	0.89[JPT][hapmap]
rs2091818	0.94[JPT][hapmap]
rs2220782	0.89[JPT][hapmap]
rs2405925	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2405928	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2405930	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2405931	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs2406115	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2406116	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2406118	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2406122	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2406123	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2406127	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2406128	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2452807	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2465143	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs2465144	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs2471560	0.89[JPT][hapmap]
rs2471568	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs2471569	0.90[JPT][hapmap]
rs2897275	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2897277	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2897278	0.84[JPT][hapmap]
rs2897280	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4265650	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs4526834	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4628748	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4842640	0.81[CEU][hapmap]
rs55649116	0.90[EUR][1000 genomes]
rs55733909	0.90[EUR][1000 genomes]
rs55820226	0.94[EUR][1000 genomes]
rs55956857	0.85[EUR][1000 genomes]
rs56293486	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60436792	0.90[EUR][1000 genomes]
rs61133374	0.94[EUR][1000 genomes]
rs61949047	0.82[EUR][1000 genomes]
rs61949048	0.85[EUR][1000 genomes]
rs61949049	0.85[EUR][1000 genomes]
rs61949475	0.94[EUR][1000 genomes]
rs61949482	0.92[EUR][1000 genomes]
rs61949483	0.87[EUR][1000 genomes]
rs61950663	0.85[EUR][1000 genomes]
rs61950665	0.85[EUR][1000 genomes]
rs61950667	0.85[EUR][1000 genomes]
rs61950671	0.85[EUR][1000 genomes]
rs61950674	0.85[EUR][1000 genomes]
rs61950706	0.89[EUR][1000 genomes]
rs61950711	0.94[EUR][1000 genomes]
rs61950712	0.94[EUR][1000 genomes]
rs61950713	0.93[EUR][1000 genomes]
rs61950714	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61950746	0.94[EUR][1000 genomes]
rs61950747	0.94[EUR][1000 genomes]
rs61950748	0.94[EUR][1000 genomes]
rs61950749	0.94[EUR][1000 genomes]
rs6538024	0.81[JPT][hapmap]
rs6538025	0.89[JPT][hapmap]
rs6538029	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs6538033	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6538042	0.95[JPT][hapmap]
rs7135177	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs7139324	0.94[JPT][hapmap]
rs7299319	1.00[JPT][hapmap]
rs7303796	0.95[JPT][hapmap]
rs767898	0.90[EUR][1000 genomes]
rs7953196	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs7957560	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs7963659	0.95[JPT][hapmap]
rs7964553	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs7972484	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs7973773	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs7977689	0.90[JPT][hapmap]
rs7980126	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs839104	0.89[JPT][hapmap]
rs839105	0.84[JPT][hapmap]
rs839148	0.89[JPT][hapmap]
rs839149	0.90[JPT][hapmap]
rs839150	0.88[JPT][hapmap]
rs839151	0.89[JPT][hapmap]
rs839152	0.87[JPT][hapmap]
rs839153	0.90[JPT][hapmap]
rs839154	0.84[JPT][hapmap]
rs839156	0.90[JPT][hapmap]
rs839157	0.89[JPT][hapmap]
rs839158	0.89[JPT][hapmap]
rs839159	0.89[JPT][hapmap]
rs839165	0.89[JPT][hapmap]
rs839166	0.90[JPT][hapmap]
rs839168	0.89[JPT][hapmap]
rs839170	0.89[JPT][hapmap]
rs839171	0.89[JPT][hapmap]
rs844434	0.89[JPT][hapmap]
rs844435	0.89[JPT][hapmap]
rs863392	0.89[JPT][hapmap]
rs863394	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs863395	0.89[JPT][hapmap]
rs865138	0.89[JPT][hapmap]
rs865721	0.89[JPT][hapmap]
rs9919783	0.89[ASN][1000 genomes]
rs9919793	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1053234	chr12:86701070-86774957	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1041126	chr12:86736601-86774957	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv1051494	chr12:86736601-86776021	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86743000-86743600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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