Variant report

Variant	rs1258329
Chromosome Location	chr10:50909546-50909547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11101218	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11592068	0.81[ASN][1000 genomes]
rs1258168	0.85[EUR][1000 genomes]
rs1258169	0.85[EUR][1000 genomes]
rs1258170	0.84[EUR][1000 genomes]
rs1258176	0.85[EUR][1000 genomes]
rs1258178	0.85[EUR][1000 genomes]
rs1258243	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258245	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258246	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258247	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258249	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1258250	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1258251	0.83[EUR][1000 genomes]
rs1258252	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1258253	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1258256	0.85[EUR][1000 genomes]
rs1258258	0.86[EUR][1000 genomes]
rs1258260	0.86[EUR][1000 genomes]
rs1258323	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1258326	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1258330	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1268722	0.85[EUR][1000 genomes]
rs1268723	0.84[EUR][1000 genomes]
rs1270562	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1271629	0.84[EUR][1000 genomes]
rs1625258	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1659305	0.85[EUR][1000 genomes]
rs1720367	0.87[AMR][1000 genomes]
rs2889729	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4372365	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56948641	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61849382	0.81[ASN][1000 genomes]
rs6816	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs745836	0.86[EUR][1000 genomes]
rs745837	0.85[EUR][1000 genomes]
rs745838	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1037405	chr10:50800817-50940545	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv895378	chr10:50801342-50955649	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50909000-50909600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:50909000-50909800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:50909400-50909600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:50909400-50909800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:50909400-50909800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:50909400-50909800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:50909400-50909800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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