Variant report

Variant	rs12583457
Chromosome Location	chr13:76688896-76688897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11149014	1.00[AMR][1000 genomes]
rs11149020	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11839322	1.00[AMR][1000 genomes]
rs11840922	1.00[AMR][1000 genomes]
rs11841217	1.00[AMR][1000 genomes]
rs12583998	1.00[AMR][1000 genomes]
rs12584083	1.00[AMR][1000 genomes]
rs12584247	1.00[AMR][1000 genomes]
rs12584373	1.00[AMR][1000 genomes]
rs12584639	1.00[AMR][1000 genomes]
rs1461988	1.00[AMR][1000 genomes]
rs1576535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35344079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv900580	chr13:76665408-76735400	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76686800-76691600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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