Variant report

Variant	rs12583997
Chromosome Location	chr13:53574886-53574887
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10507573	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12584636	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12586102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17053235	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2093640	0.80[ASN][1000 genomes]
rs55724041	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74088744	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74088759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74088762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74088763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53572600-53578000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr13:53574000-53575600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr13:53574600-53575200	Enhancers	Pancreas	Pancrea
4	chr13:53574800-53575000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:53574800-53575800	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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