Variant report

Variant	rs12584083
Chromosome Location	chr13:76601693-76601694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11149014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11149020	1.00[AMR][1000 genomes]
rs11839322	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11840922	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11841217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12583457	1.00[AMR][1000 genomes]
rs12583900	0.96[ASN][1000 genomes]
rs12583998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12584247	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12584373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12584639	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1461988	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1576535	1.00[AMR][1000 genomes]
rs35344079	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7986747	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76601200-76601800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:76601200-76601800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:76601200-76602000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr13:76601200-76602000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:76601400-76601800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:76601400-76601800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:76601400-76601800	Enhancers	Brain Substantia Nigra	brain
8	chr13:76601400-76602000	Genic enhancers	K562	blood
9	chr13:76601600-76605800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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