Variant report

Variant	rs12584234
Chromosome Location	chr13:65332756-65332757
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1407976	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1496158	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9564194	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9571276	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455914	chr13:64432922-65368490	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv561965	chr13:64432922-65368490	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3367739	chr13:64805577-65549276	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1038150	chr13:65224379-65354892	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1042755	chr13:65300441-65400043	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65314800-65333000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:65331000-65333000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:65331000-65335200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr13:65331800-65333800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:65332200-65333400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:65332200-65333400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:65332200-65333400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:65332200-65333400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:65332200-65333600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:65332400-65332800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:65332400-65333200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr13:65332400-65333600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr13:65332600-65333000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:65332600-65333400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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