Variant report

Variant	rs12584636
Chromosome Location	chr13:53582756-53582757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10507573	0.87[AMR][1000 genomes]
rs12583997	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12586102	0.87[ASN][1000 genomes]
rs17053235	0.80[ASN][1000 genomes]
rs55724041	0.84[ASN][1000 genomes]
rs74088744	0.84[ASN][1000 genomes]
rs74088759	0.87[ASN][1000 genomes]
rs74088762	0.87[ASN][1000 genomes]
rs74088763	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53575800-53584400	Weak transcription	Esophagus	oesophagus
2	chr13:53580600-53589000	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:53581200-53584400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr13:53581800-53583400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:53581800-53587800	Enhancers	Duodenum Mucosa	Duodenum
6	chr13:53582000-53583200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:53582200-53583000	Enhancers	Primary B cells from cord blood	blood
8	chr13:53582400-53583400	Weak transcription	Small Intestine	intestine
9	chr13:53582400-53584200	Weak transcription	Pancreas	Pancrea
10	chr13:53582400-53584400	Weak transcription	Gastric	stomach
11	chr13:53582400-53584600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr13:53582600-53586600	Weak transcription	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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