Variant report

Variant	rs12587405
Chromosome Location	chr14:33045620-33045621
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:33045196..33046015-chr14:34260619..34262125,4	MCF-7	breast:
2	chr14:33045417..33048110-chr14:34259925..34261939,2	MCF-7	breast:
3	chr14:33045071..33045934-chr14:34791938..34792645,3	MCF-7	breast:
4	chr14:33040924..33044247-chr14:33045114..33047639,3	MCF-7	breast:
5	chr14:33045054..33045996-chr14:34696817..34697414,2	MCF-7	breast:
6	chr14:33044203..33046023-chr14:35022537..35024104,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000129521	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10144948	0.83[CEU][hapmap]
rs10151427	0.83[CEU][hapmap]
rs1155069	0.83[CEU][hapmap]
rs11626416	0.83[CEU][hapmap]
rs4981990	0.82[CEU][hapmap]
rs768787	0.93[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
3	chr14:33041000-33045800	Weak transcription	Brain Germinal Matrix	brain
4	chr14:33042400-33046000	Weak transcription	Right Ventricle	heart
5	chr14:33042400-33047000	Weak transcription	GM12878-XiMat	blood
6	chr14:33042400-33053400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr14:33042400-33058200	Weak transcription	Left Ventricle	heart
8	chr14:33042600-33046000	Enhancers	Liver	Liver
9	chr14:33045000-33046000	Enhancers	Colon Smooth Muscle	Colon
10	chr14:33045200-33046000	Enhancers	Fetal Heart	heart
11	chr14:33045400-33045800	Active TSS	Ovary	ovary
12	chr14:33045600-33045800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:33045600-33045800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr14:33045600-33045800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr14:33045600-33045800	Active TSS	Brain Anterior Caudate	brain
16	chr14:33045600-33045800	Active TSS	Brain Substantia Nigra	brain
17	chr14:33045600-33045800	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr14:33045600-33045800	Enhancers	Fetal Kidney	kidney
19	chr14:33045600-33045800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:33045600-33045800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr14:33045600-33045800	Active TSS	Stomach Smooth Muscle	stomach
22	chr14:33045600-33045800	Bivalent Enhancer	HUVEC	blood vessel
23	chr14:33045600-33045800	Active TSS	NH-A	brain
24	chr14:33045600-33046000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr14:33045600-33046000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr14:33045600-33046000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr14:33045600-33046000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:33045600-33046000	Enhancers	Adipose Nuclei	Adipose
29	chr14:33045600-33046000	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr14:33045600-33046000	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr14:33045600-33046000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
32	chr14:33045600-33046000	Flanking Active TSS	Rectal Smooth Muscle	rectum
33	chr14:33045600-33046000	Active TSS	Right Atrium	heart
34	chr14:33045600-33046000	Enhancers	HMEC	breast
35	chr14:33045600-33046000	Enhancers	NHLF	lung
36	chr14:33045600-33046200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr14:33045600-33046200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:33045600-33046200	Enhancers	Fetal Muscle Leg	muscle
39	chr14:33045600-33046200	Enhancers	HSMMtube	muscle
40	chr14:33045600-33046200	Enhancers	NHDF-Ad	bronchial
41	chr14:33045600-33046200	Bivalent Enhancer	Osteobl	bone
42	chr14:33045600-33046600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:33045600-33047400	Enhancers	Brain Angular Gyrus	brain
44	chr14:33045600-33047600	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr14:33045600-33048000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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