Variant report

Variant	rs12591181
Chromosome Location	chr15:34431070-34431071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34427280..34431137-chr15:34431263..34436776,5	K562	blood:
2	chr15:34429122..34431401-chr15:34501177..34503690,2	K562	blood:
3	chr15:34430630..34433436-chr15:34437800..34440377,2	K562	blood:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10775222	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10851950	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10851952	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs11072998	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11635964	0.92[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap]
rs11636442	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11852537	0.82[CEU][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs11857684	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs12437551	0.88[CEU][hapmap];0.84[JPT][hapmap]
rs12594077	0.81[CEU][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs16958829	0.81[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs16958848	0.86[ASN][1000 genomes]
rs1836977	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1836978	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1978810	0.90[JPT][hapmap]
rs2339368	0.89[ASN][1000 genomes]
rs2339369	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28538047	0.86[ASN][1000 genomes]
rs28813796	0.86[ASN][1000 genomes]
rs4780226	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57530092	0.87[ASN][1000 genomes]
rs59635553	0.87[ASN][1000 genomes]
rs60749797	0.86[ASN][1000 genomes]
rs6495580	0.87[ASN][1000 genomes]
rs6495622	0.81[CEU][hapmap]
rs7172633	0.87[ASN][1000 genomes]
rs7173244	0.86[ASN][1000 genomes]
rs7174442	0.81[CEU][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7174586	0.86[ASN][1000 genomes]
rs7175168	0.89[ASN][1000 genomes]
rs7178203	0.81[CEU][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7178988	0.90[JPT][hapmap]
rs7181687	0.90[JPT][hapmap]
rs7181902	0.89[JPT][hapmap]
rs73376156	0.82[ASN][1000 genomes]
rs73376164	0.92[ASN][1000 genomes]
rs73378128	0.87[ASN][1000 genomes]
rs73378138	0.87[ASN][1000 genomes]
rs73378141	0.85[ASN][1000 genomes]
rs7497840	0.85[ASN][1000 genomes]
rs7497951	0.86[ASN][1000 genomes]
rs8025406	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8025730	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs8027499	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs8028932	0.87[ASN][1000 genomes]
rs8028950	0.87[ASN][1000 genomes]
rs8031102	0.90[ASN][1000 genomes]
rs8035493	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8036468	0.84[JPT][hapmap]
rs8040732	0.80[CEU][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs8040861	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8043216	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs9920654	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9972505	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34415400-34434600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:34415600-34431400	Weak transcription	NH-A	brain
3	chr15:34415600-34432800	Weak transcription	Osteobl	bone
4	chr15:34415800-34432800	Weak transcription	NHDF-Ad	bronchial
5	chr15:34416200-34439200	Weak transcription	HUVEC	blood vessel
6	chr15:34417600-34431400	Weak transcription	HSMMtube	muscle
7	chr15:34417600-34439400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:34417800-34436800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:34419200-34431200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:34419400-34434800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:34419400-34441800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:34421800-34431600	Weak transcription	HSMM	muscle
13	chr15:34422000-34431400	Weak transcription	Primary T cells from cord blood	blood
14	chr15:34423600-34434600	Weak transcription	Left Ventricle	heart
15	chr15:34424400-34446400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:34424800-34431600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:34424800-34432400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr15:34425200-34432400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:34425400-34431400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr15:34425400-34438200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:34425800-34432200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:34425800-34439800	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:34426200-34431800	Weak transcription	Fetal Intestine Large	intestine
24	chr15:34426400-34431400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:34426400-34434600	Weak transcription	Right Ventricle	heart
26	chr15:34427200-34431600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:34427400-34435400	Weak transcription	Fetal Stomach	stomach
28	chr15:34427600-34437000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr15:34427800-34431800	Weak transcription	NHLF	lung
30	chr15:34427800-34432000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr15:34427800-34434600	Weak transcription	NHEK	skin
32	chr15:34427800-34446400	Weak transcription	Psoas Muscle	Psoas
33	chr15:34428000-34431400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr15:34428000-34431400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:34428000-34431600	Weak transcription	Fetal Lung	lung
36	chr15:34428000-34434800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:34428000-34438400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:34428000-34441800	Weak transcription	Esophagus	oesophagus
39	chr15:34428200-34435400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:34428400-34431200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr15:34428400-34432600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:34428400-34439800	Weak transcription	Thymus	Thymus
43	chr15:34428600-34432800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:34428800-34431200	Weak transcription	Liver	Liver
45	chr15:34428800-34442400	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:34429000-34431400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:34429000-34442400	Weak transcription	Aorta	Aorta
48	chr15:34429000-34444400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr15:34429200-34431600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:34429200-34434600	Weak transcription	Brain Germinal Matrix	brain

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