The 2.0 version of rSNPBase

Variant report

Variant rs12591660
Chromosome Location chr15:77143578-77143579
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:77111600-77144000 Weak transcription Primary T helper naive cells fromperipheralblood blood
2 chr15:77111600-77174200 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr15:77112200-77196000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
4 chr15:77115400-77144600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr15:77116800-77144000 Weak transcription Brain Inferior Temporal Lobe brain
6 chr15:77120400-77158400 Weak transcription Colon Smooth Muscle Colon
7 chr15:77123200-77144800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr15:77123200-77153200 Weak transcription Muscle Satellite Cultured Cells --
9 chr15:77124400-77149600 Weak transcription HepG2 liver
10 chr15:77125800-77175400 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr15:77126000-77145600 Weak transcription Aorta Aorta
12 chr15:77130200-77143600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr15:77130600-77147400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr15:77131200-77155600 Weak transcription Left Ventricle heart
15 chr15:77131400-77148000 Weak transcription Placenta Placenta
16 chr15:77131800-77144000 Weak transcription HSMM muscle
17 chr15:77133200-77147600 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr15:77133200-77196800 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr15:77133800-77143600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr15:77137000-77144000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr15:77139600-77144000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr15:77139800-77145600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr15:77139800-77155600 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr15:77139800-77158400 Weak transcription Rectal Smooth Muscle rectum
25 chr15:77140000-77144800 Weak transcription NHLF lung
26 chr15:77140000-77153600 Weak transcription Brain Cingulate Gyrus brain
27 chr15:77140400-77144400 Weak transcription Brain Anterior Caudate brain
28 chr15:77140400-77144800 Weak transcription Brain Hippocampus Middle brain
29 chr15:77140800-77195800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr15:77141000-77144800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr15:77141200-77143800 Weak transcription Fetal Lung lung
32 chr15:77141200-77144200 ZNF genes & repeats Brain Germinal Matrix brain
33 chr15:77141200-77146400 ZNF genes & repeats GM12878-XiMat blood
34 chr15:77141400-77143600 Strong transcription Primary T cells from cord blood blood
35 chr15:77141400-77143800 Strong transcription Primary B cells from peripheral blood blood
36 chr15:77141400-77144000 Strong transcription Breast Myoepithelial Primary Cells Breast
37 chr15:77141400-77171600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr15:77141600-77143800 Strong transcription Fetal Muscle Trunk muscle
39 chr15:77141600-77143800 Strong transcription Monocytes-CD14+_RO01746 blood
40 chr15:77141600-77144000 Strong transcription Duodenum Smooth Muscle Duodenum
41 chr15:77141600-77144800 Strong transcription Fetal Thymus thymus
42 chr15:77141600-77146800 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
43 chr15:77141800-77143800 Strong transcription Cortex derived primary cultured neurospheres brain
44 chr15:77141800-77144200 Strong transcription Fetal Intestine Large intestine
45 chr15:77141800-77147400 Weak transcription Fetal Kidney kidney
46 chr15:77141800-77168000 Weak transcription Spleen Spleen
47 chr15:77142000-77143600 Strong transcription Primary B cells from cord blood blood
48 chr15:77142000-77148200 Weak transcription Gastric stomach
49 chr15:77142000-77158000 Weak transcription Brain Angular Gyrus brain
50 chr15:77142000-77167200 Weak transcription Esophagus oesophagus

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Last update: Aug 31, 2015