Variant report

Variant	rs12592638
Chromosome Location	chr15:76430366-76430367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76353368..76355352-chr15:76428756..76430779,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11856680	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12441886	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12442282	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12442982	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12902022	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17430570	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1874767	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2088485	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2405416	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2405417	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2935978	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2935979	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2955724	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2955726	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2955728	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2955740	0.86[ASN][1000 genomes]
rs2959867	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34482917	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35798669	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs36057974	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4886773	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4886774	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56853800	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56998110	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58555930	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66563276	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72736828	0.84[ASN][1000 genomes]
rs73446449	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs868576	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs904279	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs904280	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs904282	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs904283	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76416600-76431600	Weak transcription	Pancreas	Pancrea
2	chr15:76425800-76430600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:76426400-76432000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr15:76427400-76431000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:76428200-76431200	Weak transcription	GM12878-XiMat	blood
6	chr15:76428200-76432000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:76428400-76431200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:76428600-76431200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr15:76429000-76432000	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:76429400-76442800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:76429600-76442800	Weak transcription	Brain Angular Gyrus	brain

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