Variant report

Variant	rs12593793
Chromosome Location	chr15:76620088-76620089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11858982	0.83[AMR][1000 genomes]
rs1568083	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4886489	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4886794	0.88[EUR][1000 genomes]
rs4886804	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs71405203	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12593793	SCAPER	cis	Whole Blood	GTEx
rs12593793	SCAPER	Cis_1M	lymphoblastoid	RTeQTL
rs12593793	ISL2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76614600-76620200	Weak transcription	Left Ventricle	heart
2	chr15:76619400-76620200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:76619400-76621000	Enhancers	K562	blood
4	chr15:76619600-76620200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:76619600-76620400	Enhancers	A549	lung
6	chr15:76619600-76620600	Flanking Active TSS	Hela-S3	cervix
7	chr15:76619600-76620800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:76619800-76620400	Enhancers	HSMM	muscle
9	chr15:76619800-76620600	Enhancers	Fetal Heart	heart
10	chr15:76619800-76621800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:76620000-76620400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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