Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10514485	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10514486	0.81[AMR][1000 genomes]
rs11150245	0.95[ASN][1000 genomes]
rs11150246	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1115722	0.88[ASN][1000 genomes]
rs12923045	0.81[AMR][1000 genomes]
rs16952470	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16952510	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2009458	0.82[ASN][1000 genomes]
rs2042362	0.80[ASN][1000 genomes]
rs2061791	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2199645	0.89[ASN][1000 genomes]
rs4354957	0.84[JPT][hapmap]
rs4365299	0.88[JPT][hapmap]
rs4889076	0.83[JPT][hapmap]
rs4889090	0.80[JPT][hapmap]
rs4889093	0.87[ASN][1000 genomes]
rs4889100	0.95[ASN][1000 genomes]
rs6564728	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs7184478	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7185080	0.86[ASN][1000 genomes]
rs7192544	0.83[JPT][hapmap]
rs7192753	0.83[JPT][hapmap]
rs8050160	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:80148400-80156000	Weak transcription	Ovary	ovary
3	chr16:80148600-80155600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:80151800-80153800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr16:80151800-80154600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:80151800-80154600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:80151800-80159600	Weak transcription	Adipose Nuclei	Adipose
8	chr16:80152000-80155000	Weak transcription	Fetal Lung	lung
9	chr16:80152200-80154400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr16:80152200-80154400	Weak transcription	NHEK	skin

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