Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:182609276..182611148-chr2:182952196..182955107,2	MCF-7	breast:
2	chr2:182609007..182611805-chr2:182613664..182615671,2	MCF-7	breast:
3	chr2:182610484..182612356-chr2:182620509..182622208,2	MCF-7	breast:
4	chr2:182606478..182612379-chr2:182941539..182945973,8	MCF-7	breast:
5	chr2:182607060..182610718-chr2:182648609..182651704,3	MCF-7	breast:
6	chr2:182608011..182609726-chr2:182609960..182611902,2	MCF-7	breast:
7	chr2:182601728..182612786-chr2:182754371..182769481,60	MCF-7	breast:
8	chr2:182601328..182613741-chr2:182753153..182773539,79	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10175898	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10188644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12616753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12617923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12623595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1372130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1441158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1441159	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16867481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16867483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16867485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16867486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16867487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16867489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16867490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16867491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16867492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16867495	1.00[YRI][hapmap]
rs2696338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2696340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2696341	1.00[CHB][hapmap]
rs2696342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2696346	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182608600-182612400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:182609200-182615600	Weak transcription	Hela-S3	cervix

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