Variant report

Variant	rs12617698
Chromosome Location	chr2:128289699-128289700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128160704..128163644-chr2:128286914..128289869,2	K562	blood:
2	chr2:128287640..128290325-chr2:128292446..128294500,2	MCF-7	breast:
3	chr2:128282966..128285789-chr2:128286423..128291685,6	MCF-7	breast:
4	chr2:128288604..128291477-chr2:128457748..128460860,3	MCF-7	breast:
5	chr2:128289324..128291170-chr2:128329795..128331725,2	MCF-7	breast:
6	chr2:128288386..128290312-chr2:128297591..128299207,2	MCF-7	breast:
7	chr2:128235827..128238807-chr2:128287710..128289733,2	MCF-7	breast:
8	chr2:128288901..128291485-chr2:128567885..128570400,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000169994	Chromatin interaction
ENSG00000173349	Chromatin interaction
ENSG00000136709	Chromatin interaction
ENSG00000163166	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13429050	1.00[MEX][hapmap]
rs878461	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875014	chr2:128178415-128328375	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv2912	chr2:128281152-128307830	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128284600-128321200	Weak transcription	Spleen	Spleen
2	chr2:128285200-128292200	Enhancers	Placenta	Placenta
3	chr2:128285400-128292000	Weak transcription	Colonic Mucosa	Colon
4	chr2:128285400-128306600	Weak transcription	Right Atrium	heart
5	chr2:128285600-128290000	Enhancers	Fetal Intestine Large	intestine
6	chr2:128286000-128292200	Weak transcription	Small Intestine	intestine
7	chr2:128287600-128290000	Enhancers	Fetal Intestine Small	intestine
8	chr2:128289000-128294400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:128289200-128289800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr2:128289200-128293000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:128289400-128291600	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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