Variant report

Variant	rs12618410
Chromosome Location	chr2:37521850-37521851
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37521665..37524333-chr2:37525005..37526903,2	K562	blood:
2	chr2:37515749..37518986-chr2:37519736..37522711,3	K562	blood:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10166051	0.87[AMR][1000 genomes]
rs10176949	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10177176	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10182759	0.81[CEU][hapmap]
rs10184179	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs10190959	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10209937	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs1056021	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[ASN][1000 genomes]
rs11124569	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11124574	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11124578	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs1137437	0.96[CEU][hapmap]
rs1158218	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1158219	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11679617	0.86[EUR][1000 genomes]
rs11680401	0.82[EUR][1000 genomes]
rs11682607	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11683872	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11685805	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11689794	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11693917	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11893943	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12616151	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12712532	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13015451	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13030789	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13420463	0.87[ASN][1000 genomes]
rs1477055	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs17020490	0.86[ASN][1000 genomes]
rs1989172	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs2041836	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2268987	0.91[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2287093	0.92[CEU][hapmap]
rs2300881	0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs2300884	0.91[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2300893	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2372993	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2373000	0.82[JPT][hapmap]
rs2888434	1.00[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3213745	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34819784	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3755195	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3770752	0.92[CEU][hapmap]
rs3770754	0.82[JPT][hapmap]
rs3770757	0.83[ASN][1000 genomes]
rs3770759	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4581878	0.88[ASN][1000 genomes]
rs4670194	0.80[ASN][1000 genomes]
rs4670195	0.91[CHB][hapmap]
rs4670688	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4670689	0.91[CHB][hapmap]
rs4998429	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57361399	0.87[ASN][1000 genomes]
rs6544066	0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6743782	0.89[CEU][hapmap];0.86[JPT][hapmap]
rs71398224	0.85[ASN][1000 genomes]
rs72792829	0.83[ASN][1000 genomes]
rs74177070	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7563610	0.82[EUR][1000 genomes]
rs7568510	0.85[ASN][1000 genomes]
rs7570547	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7584565	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7589296	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs876462	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs9309004	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs12618410	PRKD3	cis	lung	GTEx
rs12618410	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs12618410	CEBPZ	cis	Thyroid	GTEx
rs12618410	CEBPZ	cis	Adipose Subcutaneous	GTEx
rs12618410	CEBPZ	cis	lung	GTEx
rs12618410	CEBPZ	cis	Esophagus Mucosa	GTEx
rs12618410	CEBPZ	cis	Esophagus Muscularis	GTEx
rs12618410	CEBPZ	cis	normal skin	skin_eQTL
rs12618410	RP11-423P10.2	cis	Esophagus Mucosa	GTEx
rs12618410	RP11-423P10.2	cis	Esophagus Muscularis	GTEx

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
2	chr2:37467600-37530200	Weak transcription	Pancreas	Pancrea
3	chr2:37482800-37528600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:37484200-37539000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:37484600-37550400	Weak transcription	Right Ventricle	heart
6	chr2:37487200-37528600	Weak transcription	Brain Substantia Nigra	brain
7	chr2:37499200-37522200	Weak transcription	Spleen	Spleen
8	chr2:37499400-37522800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:37499400-37528600	Weak transcription	Brain Anterior Caudate	brain
10	chr2:37499400-37540200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr2:37500200-37529800	Weak transcription	Fetal Intestine Small	intestine
12	chr2:37500200-37530200	Weak transcription	Gastric	stomach
13	chr2:37500600-37530200	Weak transcription	Thymus	Thymus
14	chr2:37502200-37528200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:37502200-37528600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr2:37502600-37524600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:37502600-37528600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr2:37502600-37532600	Weak transcription	Small Intestine	intestine
19	chr2:37502600-37533000	Weak transcription	Psoas Muscle	Psoas
20	chr2:37502600-37535800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:37502800-37528800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr2:37502800-37528800	Weak transcription	Brain Hippocampus Middle	brain
23	chr2:37502800-37533800	Weak transcription	Lung	lung
24	chr2:37502800-37543400	Weak transcription	Esophagus	oesophagus
25	chr2:37509000-37550800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr2:37509600-37528600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr2:37509600-37539000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr2:37510200-37526600	Weak transcription	K562	blood
29	chr2:37510600-37536600	Weak transcription	Placenta	Placenta
30	chr2:37510800-37532200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr2:37511000-37533600	Weak transcription	Left Ventricle	heart
32	chr2:37511000-37550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr2:37511200-37530200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr2:37511200-37534600	Weak transcription	HSMMtube	muscle
35	chr2:37511800-37528600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr2:37512600-37523000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr2:37513600-37543200	Weak transcription	NHLF	lung
38	chr2:37515600-37527800	Weak transcription	A549	lung
39	chr2:37515600-37530200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr2:37515600-37539000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr2:37515800-37545400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr2:37516000-37528600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr2:37516600-37526400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr2:37516600-37528600	Weak transcription	NHDF-Ad	bronchial
45	chr2:37516600-37532800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr2:37516800-37545200	Weak transcription	Fetal Kidney	kidney
47	chr2:37517400-37542400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr2:37517600-37537800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr2:37518200-37539600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:37518800-37523200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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