Variant report

Variant	rs12620654
Chromosome Location	chr2:210440531-210440532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10172200	0.87[JPT][hapmap]
rs10196314	0.87[JPT][hapmap]
rs10196600	0.87[JPT][hapmap]
rs10198751	1.00[CEU][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs10204207	0.83[ASN][1000 genomes]
rs10206817	0.93[JPT][hapmap]
rs10207186	0.84[ASN][1000 genomes]
rs10490021	0.87[JPT][hapmap]
rs10932305	0.87[JPT][hapmap]
rs11692075	0.87[JPT][hapmap]
rs12613572	0.83[EUR][1000 genomes]
rs12614031	0.87[JPT][hapmap]
rs12614974	0.88[CEU][hapmap]
rs12615372	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12616589	1.00[CEU][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs12618080	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs12621444	0.83[EUR][1000 genomes]
rs12622979	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12623404	0.88[CEU][hapmap]
rs12992342	0.82[ASN][1000 genomes]
rs13385585	0.87[JPT][hapmap]
rs13419929	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1396779	0.91[ASN][1000 genomes]
rs1509465	1.00[JPT][hapmap]
rs1509468	0.88[JPT][hapmap]
rs1509469	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs16843034	0.81[EUR][1000 genomes]
rs16843329	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs16843351	0.93[JPT][hapmap]
rs16843354	0.87[JPT][hapmap]
rs16843360	0.86[JPT][hapmap]
rs16843382	0.87[JPT][hapmap]
rs16843453	0.87[JPT][hapmap]
rs16843614	0.87[JPT][hapmap]
rs16843618	0.87[JPT][hapmap]
rs169636	0.82[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs2048250	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2191910	0.87[JPT][hapmap]
rs2239552	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs2239553	0.87[JPT][hapmap]
rs2239672	0.87[JPT][hapmap]
rs2268042	0.87[JPT][hapmap]
rs2268044	0.87[JPT][hapmap]
rs2271252	0.87[JPT][hapmap]
rs2286849	0.86[JPT][hapmap]
rs2286850	0.87[JPT][hapmap]
rs2300154	0.87[JPT][hapmap]
rs2366112	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2663648	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2663649	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2663651	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2663653	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs2663659	0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2710474	0.83[ASN][1000 genomes]
rs2710475	0.82[ASN][1000 genomes]
rs2710477	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs2710479	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2710482	0.87[JPT][hapmap]
rs2710486	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs288070	0.82[MEX][hapmap]
rs288071	0.82[MEX][hapmap]
rs288079	0.82[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs288081	0.82[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs288084	0.88[ASN][1000 genomes]
rs288087	0.82[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs288088	0.86[ASN][1000 genomes]
rs288096	0.82[MEX][hapmap]
rs34455059	0.81[ASN][1000 genomes]
rs34850994	0.82[ASN][1000 genomes]
rs35409969	0.81[ASN][1000 genomes]
rs3738935	0.81[JPT][hapmap]
rs3754597	0.87[JPT][hapmap]
rs3768810	0.87[JPT][hapmap]
rs3768813	0.87[JPT][hapmap]
rs3768814	0.87[JPT][hapmap]
rs3768815	0.87[JPT][hapmap]
rs3768816	0.87[JPT][hapmap]
rs3768822	0.87[JPT][hapmap]
rs3768826	0.87[JPT][hapmap]
rs3768832	0.87[JPT][hapmap]
rs3768833	0.87[JPT][hapmap]
rs3768834	0.87[JPT][hapmap]
rs3768835	0.87[JPT][hapmap]
rs3820746	0.91[JPT][hapmap]
rs3820748	0.87[JPT][hapmap]
rs4673486	0.87[JPT][hapmap]
rs55911510	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56023260	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56164239	0.86[ASN][1000 genomes]
rs56677957	0.89[ASN][1000 genomes]
rs56775639	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56853570	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57114516	0.80[EUR][1000 genomes]
rs57383822	0.83[EUR][1000 genomes]
rs57781584	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58636345	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59032380	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60138527	0.82[EUR][1000 genomes]
rs60359169	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60497472	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6709925	0.87[JPT][hapmap]
rs6717554	0.87[JPT][hapmap]
rs6720659	0.87[JPT][hapmap]
rs6722585	0.81[EUR][1000 genomes]
rs6724834	0.87[JPT][hapmap]
rs6726061	0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6733319	0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6746029	0.87[JPT][hapmap]
rs6752348	0.83[EUR][1000 genomes]
rs723683	0.87[JPT][hapmap]
rs73071034	0.83[EUR][1000 genomes]
rs73071071	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73071085	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs741006	0.87[JPT][hapmap]
rs741007	0.86[JPT][hapmap]
rs7568260	0.83[EUR][1000 genomes]
rs7593381	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7594601	0.87[JPT][hapmap]
rs906831	0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[ASN][1000 genomes]
rs9288410	0.88[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs962475	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs994862	0.87[JPT][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210431600-210441200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:210434400-210441200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:210435200-210442200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:210437800-210441600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:210440400-210442200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:210440400-210443000	Enhancers	Cortex derived primary cultured neurospheres	brain

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