Variant report

Variant	rs12622305
Chromosome Location	chr2:210653400-210653401
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10182553	0.86[ASN][1000 genomes]
rs10490022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10804176	0.81[EUR][1000 genomes]
rs10932305	0.81[EUR][1000 genomes]
rs10932306	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11674672	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11674950	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11677476	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677489	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11678044	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687043	0.85[EUR][1000 genomes]
rs11689771	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11692345	0.85[EUR][1000 genomes]
rs11692608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11693202	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11884376	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11887161	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11898077	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11900602	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12105654	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12105660	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12615516	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12616589	0.81[JPT][hapmap]
rs12619203	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12619409	0.81[EUR][1000 genomes]
rs1476876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1476877	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1509468	0.82[JPT][hapmap]
rs1509469	0.81[JPT][hapmap]
rs16843544	0.81[EUR][1000 genomes]
rs16843614	0.81[EUR][1000 genomes]
rs16843618	0.81[EUR][1000 genomes]
rs16843626	0.81[EUR][1000 genomes]
rs2098204	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2215624	0.85[EUR][1000 genomes]
rs2215625	0.85[EUR][1000 genomes]
rs2239553	0.81[EUR][1000 genomes]
rs2268042	0.81[EUR][1000 genomes]
rs2284360	0.81[EUR][1000 genomes]
rs2300154	0.81[EUR][1000 genomes]
rs2710477	0.92[JPT][hapmap]
rs35337581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35872449	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3754597	0.81[EUR][1000 genomes]
rs4672559	0.88[EUR][1000 genomes]
rs56825045	0.81[EUR][1000 genomes]
rs57305145	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57542539	0.81[EUR][1000 genomes]
rs57637604	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57853945	0.81[EUR][1000 genomes]
rs57990979	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58248939	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58295121	0.81[EUR][1000 genomes]
rs58525719	0.81[EUR][1000 genomes]
rs58779755	0.81[EUR][1000 genomes]
rs59555743	0.81[EUR][1000 genomes]
rs60161291	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60640585	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61333809	0.81[EUR][1000 genomes]
rs61356588	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61420319	0.81[EUR][1000 genomes]
rs6707679	0.81[EUR][1000 genomes]
rs6716831	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6742314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73074733	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73074750	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73074751	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73074763	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73074778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73074779	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73074784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73074787	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73074791	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73074801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73076704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73076710	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564369	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7569393	0.88[EUR][1000 genomes]
rs7594601	0.81[EUR][1000 genomes]
rs7595017	0.91[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs975551	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs975552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210637600-210653800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr2:210638200-210661400	Weak transcription	Fetal Brain Female	brain
3	chr2:210638400-210660000	Weak transcription	Fetal Brain Male	brain
4	chr2:210643800-210655800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:210644400-210655800	Weak transcription	Brain Germinal Matrix	brain
6	chr2:210646000-210656600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:210646400-210654600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:210648600-210653800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:210648600-210655800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:210650400-210654800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:210651200-210662000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr2:210652000-210654800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
14	chr2:210652400-210681000	Weak transcription	Brain Anterior Caudate	brain
15	chr2:210652800-210660200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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