Variant report

Variant	rs12629826
Chromosome Location	chr3:145296773-145296774
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10935563	0.85[EUR][1000 genomes]
rs11921837	0.87[EUR][1000 genomes]
rs12107276	0.87[EUR][1000 genomes]
rs12489149	0.86[EUR][1000 genomes]
rs12495502	0.86[EUR][1000 genomes]
rs13062613	0.82[EUR][1000 genomes]
rs13070719	0.80[EUR][1000 genomes]
rs13073334	0.85[EUR][1000 genomes]
rs13076053	0.87[EUR][1000 genomes]
rs1481069	0.85[EUR][1000 genomes]
rs1481074	0.80[EUR][1000 genomes]
rs1481079	0.82[EUR][1000 genomes]
rs1481081	0.82[EUR][1000 genomes]
rs1481083	0.83[EUR][1000 genomes]
rs1585941	0.81[EUR][1000 genomes]
rs1585942	0.81[EUR][1000 genomes]
rs17236040	0.85[EUR][1000 genomes]
rs17236068	0.87[EUR][1000 genomes]
rs1851562	0.82[EUR][1000 genomes]
rs1904911	0.82[EUR][1000 genomes]
rs2178058	0.86[EUR][1000 genomes]
rs2178059	0.86[EUR][1000 genomes]
rs2375832	0.81[EUR][1000 genomes]
rs2375833	0.81[EUR][1000 genomes]
rs2375834	0.81[EUR][1000 genomes]
rs2375835	0.83[EUR][1000 genomes]
rs2889217	0.81[EUR][1000 genomes]
rs35234760	0.87[EUR][1000 genomes]
rs35953265	0.82[EUR][1000 genomes]
rs4300969	0.80[EUR][1000 genomes]
rs4356774	0.80[EUR][1000 genomes]
rs4359769	0.81[EUR][1000 genomes]
rs4470459	0.80[EUR][1000 genomes]
rs4473515	0.81[EUR][1000 genomes]
rs4681242	0.82[EUR][1000 genomes]
rs55725415	0.81[EUR][1000 genomes]
rs56148210	0.86[EUR][1000 genomes]
rs57786177	0.81[EUR][1000 genomes]
rs58386509	0.80[EUR][1000 genomes]
rs61099470	0.87[EUR][1000 genomes]
rs62271809	0.81[EUR][1000 genomes]
rs62271849	0.87[EUR][1000 genomes]
rs66972809	0.86[EUR][1000 genomes]
rs67320965	0.86[EUR][1000 genomes]
rs6792694	0.85[EUR][1000 genomes]
rs6792834	0.85[EUR][1000 genomes]
rs7609585	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7626298	0.80[EUR][1000 genomes]
rs7631978	0.87[EUR][1000 genomes]
rs7648043	0.80[EUR][1000 genomes]
rs9917807	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv877587	chr3:144949453-145355433	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv1839695	chr3:145225110-145324049	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013005	chr3:145285648-145357856	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv877607	chr3:145291677-145370402	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145296200-145296800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:145296200-145296800	Enhancers	Stomach Smooth Muscle	stomach

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