Variant report

Variant	rs12631899
Chromosome Location	chr3:144268855-144268856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1036439	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10490827	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10935507	0.87[ASN][1000 genomes]
rs12632855	0.99[ASN][1000 genomes]
rs12638468	0.92[ASN][1000 genomes]
rs12638544	0.96[ASN][1000 genomes]
rs12639461	0.99[ASN][1000 genomes]
rs13081974	0.92[ASN][1000 genomes]
rs1815189	0.89[ASN][1000 genomes]
rs4290842	0.93[ASN][1000 genomes]
rs4388021	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4681126	0.89[ASN][1000 genomes]
rs56096828	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56178175	0.95[ASN][1000 genomes]
rs56191622	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56228220	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57393618	0.88[ASN][1000 genomes]
rs59900584	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61641065	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6783056	0.83[ASN][1000 genomes]
rs73009099	0.93[ASN][1000 genomes]
rs73871205	0.95[ASN][1000 genomes]
rs73871207	0.95[ASN][1000 genomes]
rs73871211	0.99[ASN][1000 genomes]
rs73871221	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73871228	0.91[ASN][1000 genomes]
rs73871240	0.88[ASN][1000 genomes]
rs73871243	0.88[ASN][1000 genomes]
rs73871244	0.88[ASN][1000 genomes]
rs73871245	0.88[ASN][1000 genomes]
rs73871248	0.88[ASN][1000 genomes]
rs73871252	0.88[ASN][1000 genomes]
rs73875119	0.93[ASN][1000 genomes]
rs73875127	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73875134	0.93[ASN][1000 genomes]
rs73875140	0.95[ASN][1000 genomes]
rs7614253	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7630402	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7636316	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7637942	0.89[ASN][1000 genomes]
rs920146	0.94[ASN][1000 genomes]
rs9840395	0.82[JPT][hapmap]
rs9844730	0.87[ASN][1000 genomes]
rs9866198	0.89[ASN][1000 genomes]
rs9866442	0.90[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs9873732	0.88[ASN][1000 genomes]
rs9878902	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1010388	chr3:144236022-144326640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1001888	chr3:144239415-144272509	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv536753	chr3:144239415-144272509	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1013350	chr3:144239415-144326640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv536754	chr3:144239415-144326640	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv877572	chr3:144244265-144312402	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1012719	chr3:144264442-144283362	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv877573	chr3:144265840-144323993	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv1014395	chr3:144268563-144283849	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144266400-144269000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:144266600-144269000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:144266600-144269400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:144266600-144271000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:144267000-144269000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:144267200-144269000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:144268200-144269200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:144268400-144269000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:144268400-144269000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:144268400-144272400	Weak transcription	Fetal Lung	lung
11	chr3:144268800-144269200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:144268800-144271800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:144268800-144272000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:144268800-144272200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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