Variant report

Variant	rs12632962
Chromosome Location	chr3:34536095-34536096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1358616	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1529072	0.89[ASN][1000 genomes]
rs17031657	0.88[ASN][1000 genomes]
rs1919618	0.94[ASN][1000 genomes]
rs1919619	0.95[ASN][1000 genomes]
rs1919620	0.95[ASN][1000 genomes]
rs35236754	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35289126	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4678468	0.84[ASN][1000 genomes]
rs4678469	0.89[ASN][1000 genomes]
rs6768570	0.87[ASN][1000 genomes]
rs6788612	0.95[ASN][1000 genomes]
rs73058737	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9311051	0.93[ASN][1000 genomes]
rs9836767	0.95[ASN][1000 genomes]
rs9854604	0.88[ASN][1000 genomes]
rs9861656	0.95[ASN][1000 genomes]
rs9880774	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876683	chr3:34451940-34536095	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1007906	chr3:34466966-34607465	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876684	chr3:34502652-34566947	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12632962	GOLGA4	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34535400-34536600	Enhancers	Fetal Intestine Large	intestine
2	chr3:34535600-34536400	Enhancers	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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