Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12495343	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1404297	0.88[EUR][1000 genomes]
rs1829967	0.89[EUR][1000 genomes]
rs1973800	0.89[EUR][1000 genomes]
rs1973801	0.89[EUR][1000 genomes]
rs1997002	0.89[EUR][1000 genomes]
rs2244294	0.89[EUR][1000 genomes]
rs2252530	0.87[EUR][1000 genomes]
rs2594558	0.82[EUR][1000 genomes]
rs2594562	0.83[EUR][1000 genomes]
rs2680245	0.82[EUR][1000 genomes]
rs2680246	0.82[EUR][1000 genomes]
rs2680260	0.87[EUR][1000 genomes]
rs2680274	0.87[EUR][1000 genomes]
rs2680277	0.83[EUR][1000 genomes]
rs2680280	0.90[EUR][1000 genomes]
rs2691077	0.89[EUR][1000 genomes]
rs2691078	0.88[EUR][1000 genomes]
rs2691079	0.88[EUR][1000 genomes]
rs2691080	0.88[EUR][1000 genomes]
rs2691083	0.88[EUR][1000 genomes]
rs2691084	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2691085	0.80[EUR][1000 genomes]
rs2691089	0.91[EUR][1000 genomes]
rs2691093	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2873054	0.82[ASN][1000 genomes]
rs6765917	0.82[ASN][1000 genomes]
rs6803932	0.83[EUR][1000 genomes]
rs7611902	0.90[EUR][1000 genomes]
rs950904	0.89[EUR][1000 genomes]
rs9810377	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9822266	0.90[EUR][1000 genomes]
rs9832088	0.88[EUR][1000 genomes]
rs9841087	0.82[ASN][1000 genomes]
rs9860204	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv441830	chr3:81909338-81923746	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81910400-81915000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:81911000-81914200	Enhancers	Dnd41	blood
3	chr3:81913000-81914800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:81913600-81914600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:81914000-81914400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:81914000-81914800	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:81914000-81927000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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