Variant report

Variant	rs12638592
Chromosome Location	chr3:82007857-82007858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10433513	0.81[ASN][1000 genomes]
rs11127745	0.81[ASN][1000 genomes]
rs12631503	0.81[ASN][1000 genomes]
rs17019416	0.81[ASN][1000 genomes]
rs17019418	0.81[ASN][1000 genomes]
rs17019431	0.86[ASN][1000 genomes]
rs55988714	0.81[ASN][1000 genomes]
rs56019819	0.81[ASN][1000 genomes]
rs56028558	0.86[ASN][1000 genomes]
rs56120615	0.81[ASN][1000 genomes]
rs60428278	0.86[ASN][1000 genomes]
rs61617076	0.81[ASN][1000 genomes]
rs6784904	0.81[ASN][1000 genomes]
rs73134760	0.80[ASN][1000 genomes]
rs73134764	0.80[ASN][1000 genomes]
rs73134800	0.81[ASN][1000 genomes]
rs73134802	0.81[ASN][1000 genomes]
rs73136709	0.81[ASN][1000 genomes]
rs73138733	0.81[ASN][1000 genomes]
rs73138765	0.81[ASN][1000 genomes]
rs73138781	0.86[ASN][1000 genomes]
rs73138782	0.86[ASN][1000 genomes]
rs73138783	0.86[ASN][1000 genomes]
rs73140754	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7611964	0.81[ASN][1000 genomes]
rs7612181	0.81[ASN][1000 genomes]
rs7618777	0.81[ASN][1000 genomes]
rs7619049	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999992	chr3:81693662-82015969	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv536605	chr3:81693662-82015969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82005400-82009000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:82007400-82009200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:82007600-82008200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:82007600-82009600	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links