Variant report

Variant	rs12639482
Chromosome Location	chr3:113696368-113696369
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113693993..113696379-chr3:113698305..113700936,2	K562	blood:
2	chr3:113695721..113697303-chr3:113698989..113700550,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12629533	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12633913	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12635058	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2251177	1.00[MEX][hapmap]
rs2654754	1.00[MEX][hapmap]
rs2654762	1.00[MEX][hapmap]
rs324041	1.00[MEX][hapmap]
rs60813875	1.00[EUR][1000 genomes]
rs61741386	1.00[EUR][1000 genomes]
rs72956668	1.00[EUR][1000 genomes]
rs72956685	1.00[EUR][1000 genomes]
rs72956700	1.00[EUR][1000 genomes]
rs72958611	1.00[EUR][1000 genomes]
rs72960754	1.00[EUR][1000 genomes]
rs72960764	1.00[EUR][1000 genomes]
rs7612534	1.00[JPT][hapmap]
rs9824856	1.00[MEX][hapmap]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113667800-113696800	Weak transcription	Right Ventricle	heart
2	chr3:113667800-113710800	Weak transcription	Esophagus	oesophagus
3	chr3:113668000-113699000	Weak transcription	Stomach Mucosa	stomach
4	chr3:113668400-113724200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:113672400-113698000	Weak transcription	Ovary	ovary
6	chr3:113673000-113700800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:113673400-113696400	Weak transcription	Brain Angular Gyrus	brain
8	chr3:113673400-113704400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:113673400-113761000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:113674000-113743800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:113676400-113723400	Weak transcription	Brain Substantia Nigra	brain
12	chr3:113678000-113724400	Weak transcription	Pancreas	Pancrea
13	chr3:113678000-113731400	Weak transcription	Gastric	stomach
14	chr3:113682800-113707200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:113683000-113723600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:113685400-113696800	Weak transcription	Lung	lung
17	chr3:113688200-113696400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr3:113688200-113697600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:113688600-113699400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:113692600-113723400	Weak transcription	Fetal Kidney	kidney
21	chr3:113692800-113696400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:113692800-113698800	Weak transcription	Liver	Liver
23	chr3:113692800-113711000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:113693000-113696400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr3:113693200-113698000	Weak transcription	Brain Anterior Caudate	brain
26	chr3:113693200-113703000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:113693200-113723800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr3:113693200-113724200	Weak transcription	A549	lung
29	chr3:113693400-113700200	Strong transcription	Primary B cells from cord blood	blood
30	chr3:113693400-113724000	Weak transcription	Colonic Mucosa	Colon
31	chr3:113693600-113696800	Weak transcription	Aorta	Aorta
32	chr3:113693600-113697600	Weak transcription	Fetal Intestine Large	intestine
33	chr3:113693600-113698800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:113693600-113699000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:113693600-113699600	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr3:113693600-113705200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:113693600-113705600	Weak transcription	Fetal Intestine Small	intestine
38	chr3:113693600-113723200	Weak transcription	Fetal Stomach	stomach
39	chr3:113693600-113724600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:113693600-113731200	Weak transcription	Spleen	Spleen
41	chr3:113693800-113699800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:113693800-113704200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr3:113693800-113704600	Weak transcription	Thymus	Thymus
44	chr3:113693800-113731400	Weak transcription	Fetal Brain Female	brain
45	chr3:113694000-113696600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr3:113694000-113696800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr3:113694000-113704000	Weak transcription	Primary hematopoietic stem cells	blood
48	chr3:113694000-113704000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr3:113694000-113729800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:113694200-113705400	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links