Variant report

Variant	rs12640734
Chromosome Location	chr4:8320126-8320127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11737208	0.89[ASN][1000 genomes]
rs4404528	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs71175476	0.80[ASN][1000 genomes]
rs73226012	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73226013	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73226015	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878595	chr4:8154534-8390646	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv829853	chr4:8172065-8320868	Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv878601	chr4:8214767-8440951	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv878602	chr4:8214767-8448992	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1009011	chr4:8225669-8424831	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv461218	chr4:8254784-8320126	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv593628	chr4:8254784-8320126	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
9	nsv470013	chr4:8315938-8377058	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12640734	CLNK	cis	parietal	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8311800-8320800	Weak transcription	Psoas Muscle	Psoas
2	chr4:8316600-8321000	Enhancers	Fetal Heart	heart
3	chr4:8317600-8322800	Weak transcription	Fetal Kidney	kidney
4	chr4:8317600-8323000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:8317800-8326200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr4:8318000-8320600	Weak transcription	Right Atrium	heart
7	chr4:8318000-8321000	Weak transcription	Adipose Nuclei	Adipose
8	chr4:8318000-8321400	Weak transcription	Fetal Lung	lung
9	chr4:8318000-8321800	Weak transcription	Esophagus	oesophagus
10	chr4:8318000-8322000	Weak transcription	Spleen	Spleen
11	chr4:8318200-8320600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:8318200-8320800	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:8318200-8320800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:8318200-8320800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:8318200-8321000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:8318200-8321000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:8318200-8321200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:8318200-8321200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:8318200-8321200	Weak transcription	NHDF-Ad	bronchial
20	chr4:8318200-8321400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:8318200-8321800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr4:8318200-8322000	Weak transcription	Fetal Intestine Large	intestine
23	chr4:8318200-8322000	Weak transcription	Lung	lung
24	chr4:8318400-8320800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:8318400-8320800	Weak transcription	Left Ventricle	heart
26	chr4:8318400-8320800	Weak transcription	Right Ventricle	heart
27	chr4:8318400-8321400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:8318600-8321000	Weak transcription	Fetal Stomach	stomach
29	chr4:8318600-8321000	Weak transcription	HMEC	breast
30	chr4:8318600-8321200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:8318600-8321200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr4:8318600-8321200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:8318600-8321200	Weak transcription	NHEK	skin
34	chr4:8318600-8324200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:8318600-8325000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr4:8318800-8320800	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:8319000-8320800	Weak transcription	Ovary	ovary
38	chr4:8319000-8321000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr4:8319000-8321600	Weak transcription	HSMM	muscle
40	chr4:8319000-8321600	Weak transcription	HSMMtube	muscle
41	chr4:8319200-8321400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:8319200-8321600	Weak transcription	Fetal Thymus	thymus
43	chr4:8319200-8324200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr4:8319200-8326200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr4:8319400-8321000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:8319400-8321400	Weak transcription	Colonic Mucosa	Colon
47	chr4:8319400-8324200	Weak transcription	Placenta Amnion	Placenta Amnion

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