Variant report

Variant	rs12643245
Chromosome Location	chr4:100651570-100651571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100483615..100485992-chr4:100651472..100653391,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138823	Chromatin interaction
ENSG00000145331	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1027223	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10516455	0.95[ASN][1000 genomes]
rs1115721	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11722443	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727560	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11729858	0.96[EUR][1000 genomes]
rs11730739	0.96[ASN][1000 genomes]
rs11936303	0.92[ASN][1000 genomes]
rs12640222	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12642668	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12648843	0.96[ASN][1000 genomes]
rs13111133	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13111603	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13112253	0.96[ASN][1000 genomes]
rs13118288	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13123629	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13123690	0.96[ASN][1000 genomes]
rs13124255	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13130068	0.92[ASN][1000 genomes]
rs13150247	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1352775	0.89[ASN][1000 genomes]
rs1388295	0.94[ASN][1000 genomes]
rs1426734	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1582793	0.93[ASN][1000 genomes]
rs1586756	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1586757	0.94[ASN][1000 genomes]
rs17029387	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1816197	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1834659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1948353	0.92[ASN][1000 genomes]
rs2866167	0.93[ASN][1000 genomes]
rs35215295	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs36098323	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56411289	0.92[EUR][1000 genomes]
rs61705069	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6831328	0.92[ASN][1000 genomes]
rs6832692	0.92[ASN][1000 genomes]
rs6840719	0.89[ASN][1000 genomes]
rs6846293	0.88[EUR][1000 genomes]
rs71614607	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs71614614	0.92[EUR][1000 genomes]
rs71614615	0.92[EUR][1000 genomes]
rs7670607	0.99[ASN][1000 genomes]
rs7677594	0.93[ASN][1000 genomes]
rs7678889	0.88[ASN][1000 genomes]
rs7688255	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7691498	0.91[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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