Variant report

Variant	rs12646265
Chromosome Location	chr4:96569637-96569638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10006511	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10013217	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10013299	0.85[ASN][1000 genomes]
rs10015906	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10016846	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10016927	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10022798	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10025352	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12506817	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12510917	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12644144	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13106700	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13129220	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13131332	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1436590	0.81[ASN][1000 genomes]
rs1436591	0.83[ASN][1000 genomes]
rs1436594	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1865852	0.81[ASN][1000 genomes]
rs28432792	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28480454	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28522563	0.82[ASN][1000 genomes]
rs2865708	0.81[ASN][1000 genomes]
rs34735998	0.81[ASN][1000 genomes]
rs34888770	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35128711	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35163600	0.81[ASN][1000 genomes]
rs35988502	0.82[ASN][1000 genomes]
rs4699269	0.82[ASN][1000 genomes]
rs5011717	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57688009	0.81[ASN][1000 genomes]
rs66961649	0.81[ASN][1000 genomes]
rs750915	0.80[ASN][1000 genomes]
rs7659302	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7674945	0.82[ASN][1000 genomes]
rs7680957	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7681580	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7682279	0.81[ASN][1000 genomes]
rs7697432	0.82[ASN][1000 genomes]
rs9884214	0.82[ASN][1000 genomes]
rs9990668	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9990964	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9992379	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9994273	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1007133	chr4:96556072-96614235	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96562800-96572600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:96569600-96571000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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