Variant report

Variant	rs1264748
Chromosome Location	chr10:116976362-116976363
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1010610	0.85[EUR][1000 genomes]
rs10736240	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10787554	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10787555	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787557	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10885658	0.90[ASN][1000 genomes]
rs10885659	0.89[ASN][1000 genomes]
rs10885660	0.89[ASN][1000 genomes]
rs10885669	0.82[EUR][1000 genomes]
rs10885671	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885672	0.83[EUR][1000 genomes]
rs10885673	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885675	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10885676	0.82[EUR][1000 genomes]
rs10885677	0.81[EUR][1000 genomes]
rs10885687	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11197081	0.88[ASN][1000 genomes]
rs11197087	0.87[ASN][1000 genomes]
rs11197093	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197094	0.85[ASN][1000 genomes]
rs11197103	0.82[EUR][1000 genomes]
rs11197107	0.84[EUR][1000 genomes]
rs11197110	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11197122	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197126	0.85[EUR][1000 genomes]
rs11197127	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11197139	0.83[EUR][1000 genomes]
rs12218100	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12358411	0.82[EUR][1000 genomes]
rs12573443	0.82[EUR][1000 genomes]
rs1264756	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1264763	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1264765	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1264768	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1264782	0.85[EUR][1000 genomes]
rs1264783	0.83[EUR][1000 genomes]
rs1264794	0.91[ASN][1000 genomes]
rs1264795	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1264796	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1264799	0.85[EUR][1000 genomes]
rs1268459	0.85[EUR][1000 genomes]
rs1268460	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1268916	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1269602	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1270442	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1270654	0.85[EUR][1000 genomes]
rs1663157	0.83[EUR][1000 genomes]
rs17092908	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17722681	0.82[EUR][1000 genomes]
rs1899718	0.88[ASN][1000 genomes]
rs1899721	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2256046	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2265930	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2440313	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2492980	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2492981	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4752724	0.82[EUR][1000 genomes]
rs7474585	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1264748	ATRNL1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116967000-116980400	Weak transcription	Fetal Kidney	kidney
2	chr10:116968400-116980600	Weak transcription	Aorta	Aorta
3	chr10:116975800-116979600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links