Variant report

Variant	rs1264776
Chromosome Location	chr10:116854258-116854259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116696953..116700606-chr10:116852065..116855116,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165832	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10490952	1.00[EUR][1000 genomes]
rs10885652	1.00[TSI][hapmap]
rs11197113	1.00[TSI][hapmap]
rs11816188	1.00[EUR][1000 genomes]
rs11819446	1.00[TSI][hapmap]
rs12256302	1.00[EUR][1000 genomes]
rs1264763	0.86[YRI][hapmap]
rs1264765	0.83[YRI][hapmap]
rs1264768	0.82[YRI][hapmap]
rs1264782	0.83[LWK][hapmap];0.86[YRI][hapmap]
rs1264783	0.86[YRI][hapmap]
rs1264792	0.83[LWK][hapmap];0.93[AMR][1000 genomes]
rs1264793	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1264796	0.82[YRI][hapmap]
rs1264802	0.82[AFR][1000 genomes]
rs1268460	0.85[YRI][hapmap]
rs1270442	0.83[YRI][hapmap]
rs17092685	1.00[EUR][1000 genomes]
rs4400712	1.00[EUR][1000 genomes]
rs7070040	1.00[EUR][1000 genomes]
rs7070442	1.00[EUR][1000 genomes]
rs7076686	1.00[EUR][1000 genomes]
rs7078359	1.00[TSI][hapmap]
rs7082007	1.00[TSI][hapmap]
rs7085220	1.00[EUR][1000 genomes]
rs7093497	1.00[TSI][hapmap]
rs7893964	1.00[TSI][hapmap]
rs7897010	1.00[EUR][1000 genomes]
rs7906377	1.00[TSI][hapmap]
rs7908005	1.00[TSI][hapmap]
rs7913994	1.00[EUR][1000 genomes]
rs7920260	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1039002	chr10:116643095-116879483	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	esv2761634	chr10:116643095-116879495	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1045654	chr10:116654574-116879483	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1043242	chr10:116655057-116883386	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv831997	chr10:116689552-116855698	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116851600-116855800	Active TSS	Ovary	ovary
2	chr10:116851600-116856200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:116851800-116854400	Active TSS	Fetal Kidney	kidney
4	chr10:116851800-116854800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:116851800-116856200	Active TSS	Brain Anterior Caudate	brain
6	chr10:116852000-116854400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:116852000-116854400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr10:116852000-116854600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr10:116852000-116854600	Active TSS	Aorta	Aorta
10	chr10:116852000-116854600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
11	chr10:116852000-116854600	Active TSS	Right Atrium	heart
12	chr10:116852000-116856200	Active TSS	Brain Angular Gyrus	brain
13	chr10:116852200-116854400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:116852200-116854400	Active TSS	Fetal Lung	lung
15	chr10:116852200-116854800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
16	chr10:116852200-116855600	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr10:116852200-116855800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:116852400-116854600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:116852400-116854600	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr10:116852600-116854400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:116853200-116855000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
22	chr10:116853400-116854400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
23	chr10:116853400-116854600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
24	chr10:116853600-116854400	Active TSS	Fetal Brain Male	brain
25	chr10:116853800-116854400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
26	chr10:116853800-116854400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:116853800-116854600	Bivalent Enhancer	Primary B cells from cord blood	blood
28	chr10:116853800-116854600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
29	chr10:116853800-116854800	Bivalent Enhancer	Fetal Heart	heart
30	chr10:116853800-116855800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr10:116853800-116856200	Active TSS	Brain Germinal Matrix	brain
32	chr10:116854000-116854400	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:116854000-116854400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
34	chr10:116854000-116854600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr10:116854000-116854600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr10:116854000-116854800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:116854000-116854800	Flanking Active TSS	Liver	Liver
38	chr10:116854000-116854800	Flanking Active TSS	Rectal Smooth Muscle	rectum
39	chr10:116854000-116855000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:116854200-116854400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
41	chr10:116854200-116854400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
42	chr10:116854200-116854400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
43	chr10:116854200-116854400	Bivalent Enhancer	Fetal Intestine Large	intestine
44	chr10:116854200-116854400	Bivalent Enhancer	HepG2	liver
45	chr10:116854200-116854600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:116854200-116854600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:116854200-116854600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:116854200-116854800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
49	chr10:116854200-116854800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:116854200-116854800	Active TSS	Fetal Stomach	stomach

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