Variant report

Variant	rs1264783
Chromosome Location	chr10:116885750-116885751
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1010610	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10736240	1.00[CHB][hapmap]
rs10787554	0.80[EUR][1000 genomes]
rs10787555	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs10787557	0.96[CEU][hapmap]
rs10885649	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10885651	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885655	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10885657	0.91[ASN][1000 genomes]
rs10885659	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs10885660	0.83[EUR][1000 genomes]
rs10885661	0.83[EUR][1000 genomes]
rs10885662	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10885664	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10885669	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10885671	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs10885672	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10885673	0.84[CEU][hapmap];0.80[CHB][hapmap]
rs10885675	0.87[CEU][hapmap];0.82[JPT][hapmap]
rs10885676	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10885680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885681	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10885683	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197066	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197071	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197072	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197084	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11197087	0.81[EUR][1000 genomes]
rs11197091	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197093	0.96[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs11197103	0.80[EUR][1000 genomes]
rs11197107	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11197110	0.88[CEU][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs11197115	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11197122	0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs11197126	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11197127	0.89[CEU][hapmap]
rs11197150	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197162	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11197163	0.81[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12218100	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs12218477	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12355617	0.83[EUR][1000 genomes]
rs12357053	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12358411	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12360503	0.90[ASN][1000 genomes]
rs12573443	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1264748	0.83[EUR][1000 genomes]
rs1264756	0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1264763	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1264765	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1264768	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1264774	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs1264776	0.86[YRI][hapmap]
rs1264782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1264794	0.88[CEU][hapmap];0.82[JPT][hapmap]
rs1264795	0.92[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1264796	0.96[CEU][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1264799	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1264802	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1268459	0.84[EUR][1000 genomes]
rs1268460	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1268916	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1270442	0.85[CEU][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs1270654	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389647	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1537685	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1663157	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092908	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs17722681	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1899721	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2152148	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172669	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs2256046	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2265930	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes]
rs2484265	0.82[EUR][1000 genomes]
rs2492980	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2492981	0.82[EUR][1000 genomes]
rs35120367	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35728982	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752724	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs923907	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv982865	chr10:116879604-116886328	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1264783	ATRNL1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116885000-116886000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:116885200-116885800	Enhancers	Pancreatic Islets	Pancreatic Islet

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