Variant report

Variant	rs12650570
Chromosome Location	chr4:81428477-81428478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10034974	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1038532	0.83[ASN][1000 genomes]
rs10857174	0.91[ASN][1000 genomes]
rs11099253	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11731831	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11937407	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11940032	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11944437	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11944925	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12510415	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12647313	0.94[ASN][1000 genomes]
rs13111449	0.81[ASN][1000 genomes]
rs13141564	0.82[ASN][1000 genomes]
rs13142845	0.99[ASN][1000 genomes]
rs13152520	0.83[ASN][1000 genomes]
rs1352076	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1385890	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1390252	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1486022	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1495489	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1495493	0.99[ASN][1000 genomes]
rs1843563	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1872576	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1874336	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1905967	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1908550	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971301	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2132267	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132268	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132269	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132271	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2172878	0.94[ASN][1000 genomes]
rs28493682	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2867781	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2903671	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34269363	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4693494	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4693495	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4693537	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5019005	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55940038	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58593245	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6534967	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6535016	0.91[ASN][1000 genomes]
rs6813764	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6823400	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6826104	0.96[ASN][1000 genomes]
rs6827369	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6831485	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6832233	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6835442	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7658613	0.84[EUR][1000 genomes]
rs7660815	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7666589	0.91[ASN][1000 genomes]
rs7674255	0.85[ASN][1000 genomes]
rs7685226	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686715	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7693460	0.85[ASN][1000 genomes]
rs7695414	0.90[ASN][1000 genomes]
rs9307720	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs967941	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9993620	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013945	chr4:81410029-81454166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81417600-81428800	Weak transcription	NHDF-Ad	bronchial
2	chr4:81422400-81429800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:81423200-81428800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:81424000-81429800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:81424200-81429800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:81424200-81430200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:81427600-81428800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr4:81427600-81431000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:81427800-81428600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:81427800-81429200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr4:81428000-81429800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:81428200-81428600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:81428200-81429000	Enhancers	K562	blood
14	chr4:81428400-81429000	Enhancers	Primary B cells from peripheral blood	blood

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