Variant report

Variant	rs12660924
Chromosome Location	chr6:132976845-132976846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17061564	0.80[ASN][1000 genomes]
rs28591660	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62427291	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6938793	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7754356	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132972600-132977000	Weak transcription	Spleen	Spleen
2	chr6:132976600-132977200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:132976600-132977200	Enhancers	Esophagus	oesophagus
4	chr6:132976600-132977200	Enhancers	Placenta	Placenta
5	chr6:132976600-132977200	Enhancers	HMEC	breast
6	chr6:132976600-132977200	Enhancers	NHEK	skin
7	chr6:132976800-132977200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:132976800-132977400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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