Variant report

Variant	rs12661422
Chromosome Location	chr6:81544421-81544422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10485283	0.86[EUR][1000 genomes]
rs10485286	0.84[EUR][1000 genomes]
rs12662185	0.86[EUR][1000 genomes]
rs12662485	0.86[EUR][1000 genomes]
rs12663298	0.86[EUR][1000 genomes]
rs12663591	0.81[EUR][1000 genomes]
rs13193950	0.90[ASN][1000 genomes]
rs13197256	0.84[EUR][1000 genomes]
rs13198210	0.86[EUR][1000 genomes]
rs13198536	0.86[EUR][1000 genomes]
rs13202436	0.90[ASN][1000 genomes]
rs13212232	0.86[EUR][1000 genomes]
rs13212944	0.86[EUR][1000 genomes]
rs16892242	0.84[EUR][1000 genomes]
rs16892247	0.86[EUR][1000 genomes]
rs16892249	0.86[EUR][1000 genomes]
rs34347716	0.85[ASN][1000 genomes]
rs34394883	0.86[EUR][1000 genomes]
rs34504200	0.86[EUR][1000 genomes]
rs34687169	0.84[EUR][1000 genomes]
rs34969790	0.84[EUR][1000 genomes]
rs35052062	0.86[EUR][1000 genomes]
rs35090599	0.84[EUR][1000 genomes]
rs35237645	0.84[EUR][1000 genomes]
rs35251642	0.84[EUR][1000 genomes]
rs35290983	0.90[ASN][1000 genomes]
rs71566906	0.84[EUR][1000 genomes]
rs71566907	0.84[EUR][1000 genomes]
rs73465800	0.86[EUR][1000 genomes]
rs73468242	0.86[EUR][1000 genomes]
rs73748847	0.86[EUR][1000 genomes]
rs997835	0.86[EUR][1000 genomes]
rs998078	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886316	chr6:81390313-81554464	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886318	chr6:81447367-81769538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2763584	chr6:81507987-81557395	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1034010	chr6:81515796-81557062	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1033173	chr6:81515796-81557383	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1033102	chr6:81515796-81568141	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2752662	chr6:81516036-81553964	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv517853	chr6:81529339-81607383	Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv1020546	chr6:81536002-81616792	Enhancers ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv516345	chr6:81536597-81554464	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81543600-81544800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:81543800-81544600	Enhancers	Osteobl	bone

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