Variant report

Variant	rs12663071
Chromosome Location	chr6:80685817-80685818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12663092	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13199685	0.80[ASN][1000 genomes]
rs1355576	0.92[ASN][1000 genomes]
rs151586	0.93[ASN][1000 genomes]
rs151650	0.88[EUR][1000 genomes]
rs151671	0.80[ASN][1000 genomes]
rs151674	0.93[ASN][1000 genomes]
rs1818439	0.92[ASN][1000 genomes]
rs2117446	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs239506	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs239508	0.90[EUR][1000 genomes]
rs239517	0.80[ASN][1000 genomes]
rs239545	0.92[ASN][1000 genomes]
rs239546	0.93[ASN][1000 genomes]
rs239547	0.86[ASN][1000 genomes]
rs239550	0.93[ASN][1000 genomes]
rs239551	0.93[ASN][1000 genomes]
rs35626280	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4706821	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60373337	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6915142	0.92[ASN][1000 genomes]
rs6918121	0.92[ASN][1000 genomes]
rs6939120	0.92[ASN][1000 genomes]
rs7754628	0.80[ASN][1000 genomes]
rs7754984	0.80[ASN][1000 genomes]
rs9294167	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9343948	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9343950	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9343951	0.91[ASN][1000 genomes]
rs9343952	0.90[EUR][1000 genomes]
rs9343956	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9350836	0.81[ASN][1000 genomes]
rs9352786	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9352787	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1032347	chr6:80284809-80694778	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv965652	chr6:80663704-80688769	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80682600-80687800	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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