Variant report

Variant	rs12665824
Chromosome Location	chr6:101144226-101144227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:101134397..101136126-chr6:101142181..101145050,2	K562	blood:
2	chr6:101134397..101137375-chr6:101141087..101145140,3	K562	blood:
3	chr6:101137250..101140625-chr6:101142166..101144758,3	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10485138	1.00[AFR][1000 genomes]
rs10485140	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10485294	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10485295	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10485297	0.83[AMR][1000 genomes]
rs12660993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12661291	1.00[AFR][1000 genomes]
rs12661493	0.81[ASN][1000 genomes]
rs12662153	0.81[ASN][1000 genomes]
rs12663536	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12664207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12664223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12664256	1.00[AFR][1000 genomes]
rs12664278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12664368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12664920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12664950	1.00[AFR][1000 genomes]
rs1336246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1501356	0.81[ASN][1000 genomes]
rs17054315	0.83[AMR][1000 genomes]
rs17060762	0.81[ASN][1000 genomes]
rs17060852	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17060914	1.00[AFR][1000 genomes]
rs17060954	1.00[AFR][1000 genomes]
rs17060978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17060985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17061014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17061023	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17061060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17061113	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17061152	0.83[AMR][1000 genomes]
rs17061158	0.83[AMR][1000 genomes]
rs17061168	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17061190	0.83[AMR][1000 genomes]
rs17061191	0.83[AMR][1000 genomes]
rs17061195	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17061206	0.92[CHB][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs240768	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs34783327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6931919	0.81[ASN][1000 genomes]
rs72942958	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv463988	chr6:101036713-101158950	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv604266	chr6:101036713-101158950	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv886455	chr6:101049108-101203051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886456	chr6:101049108-101277926	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv604270	chr6:101058886-101196080	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv604271	chr6:101072307-101158950	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv463991	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv604272	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv463992	chr6:101072307-101197953	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv604273	chr6:101072307-101197953	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv604274	chr6:101078718-101196080	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv1032826	chr6:101091434-101147095	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1028583	chr6:101091434-101152631	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv1015465	chr6:101091434-101157493	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv1031817	chr6:101091995-101157493	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv521897	chr6:101123503-101158950	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv1020692	chr6:101136992-101426071	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101093000-101145800	Weak transcription	Fetal Thymus	thymus
2	chr6:101100600-101149800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:101100800-101147600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:101100800-101164600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:101110000-101147600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:101110400-101146800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:101111200-101168200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:101111600-101168000	Weak transcription	NHDF-Ad	bronchial
9	chr6:101111800-101147200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:101111800-101147200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:101111800-101168200	Weak transcription	Osteobl	bone
12	chr6:101112000-101161200	Weak transcription	HMEC	breast
13	chr6:101118600-101168000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:101118800-101147400	Weak transcription	GM12878-XiMat	blood
15	chr6:101119000-101147000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:101119200-101165600	Weak transcription	NH-A	brain
17	chr6:101119400-101181200	Weak transcription	Left Ventricle	heart
18	chr6:101119800-101146800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:101119800-101146800	Weak transcription	Primary B cells from cord blood	blood
20	chr6:101120000-101146800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:101120000-101147000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:101120000-101148000	Weak transcription	HSMMtube	muscle
23	chr6:101122000-101148000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:101124600-101146800	Weak transcription	Dnd41	blood
25	chr6:101124800-101147400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:101126200-101147000	Weak transcription	Fetal Intestine Small	intestine
27	chr6:101127400-101146800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:101128800-101168000	Weak transcription	NHLF	lung
29	chr6:101130600-101148000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:101132600-101145000	Weak transcription	HSMM	muscle
31	chr6:101133200-101147000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:101133200-101149400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:101134000-101146800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:101134000-101149600	Weak transcription	Fetal Heart	heart
35	chr6:101137800-101148000	Weak transcription	Esophagus	oesophagus
36	chr6:101140200-101149800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:101141400-101147800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr6:101142200-101147800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:101142200-101148000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:101142400-101189600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:101142800-101147000	Weak transcription	Liver	Liver
42	chr6:101143000-101149400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:101143200-101144600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:101143200-101148000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:101143800-101148000	Weak transcription	Aorta	Aorta
46	chr6:101143800-101148000	Weak transcription	Gastric	stomach
47	chr6:101144000-101147400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:101144000-101149400	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links