Variant report
| Variant | rs12665922 |
|---|---|
| Chromosome Location | chr7:147635139-147635140 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:147634284..147636297-chr7:147811524..147814125,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10952718 | 1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap] |
| rs10952720 | 0.81[ASN][1000 genomes] |
| rs11766926 | 0.90[CHB][hapmap] |
| rs11773362 | 0.87[CHB][hapmap];0.81[JPT][hapmap] |
| rs12532921 | 0.82[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12534783 | 0.80[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap] |
| rs12537012 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12667799 | 0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes] |
| rs12670399 | 0.85[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap] |
| rs13229141 | 0.90[CHB][hapmap] |
| rs13230414 | 0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13243208 | 0.89[CEU][hapmap] |
| rs17170749 | 0.85[CEU][hapmap] |
| rs1922879 | 0.90[CHB][hapmap];0.83[JPT][hapmap] |
| rs1962426 | 0.95[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap] |
| rs2373281 | 0.95[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap] |
| rs2373283 | 0.95[CHB][hapmap] |
| rs2373285 | 0.95[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2710095 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs4725756 | 0.95[CHB][hapmap];0.81[JPT][hapmap] |
| rs4726900 | 0.90[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023913 | chr7:147521075-147806318 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026058 | chr7:147521109-147783042 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv539179 | chr7:147521109-147783042 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv934002 | chr7:147521110-147807705 | Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv1017610 | chr7:147523752-147806427 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
