Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1008905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1024417	0.87[ASN][1000 genomes]
rs1024418	0.93[ASN][1000 genomes]
rs10279616	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13243112	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1579214	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1815973	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237764	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2237765	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2283068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2283069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2299492	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2299497	0.87[ASN][1000 genomes]
rs2299498	0.87[ASN][1000 genomes]
rs2896374	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34261190	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35009695	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3808152	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3808153	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3824011	0.86[ASN][1000 genomes]
rs4728051	0.87[ASN][1000 genomes]
rs4731321	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126321800-126328800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr7:126323600-126328600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:126324800-126326800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:126325000-126326600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:126326000-126331200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:126326200-126326600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: