Variant report

Variant	rs12667717
Chromosome Location	chr7:138291331-138291332
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10232737	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10265131	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764864	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1659825	0.87[ASN][1000 genomes]
rs1659826	0.91[ASN][1000 genomes]
rs1659827	0.92[ASN][1000 genomes]
rs1659829	0.81[AMR][1000 genomes]
rs1673214	0.81[AMR][1000 genomes]
rs1673218	0.88[ASN][1000 genomes]
rs57072133	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62485281	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs963279	0.89[ASN][1000 genomes]
rs963280	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138284200-138293000	Weak transcription	Fetal Kidney	kidney
2	chr7:138285000-138292800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:138287600-138303200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:138289000-138292000	Weak transcription	HepG2	liver
5	chr7:138289000-138292200	Weak transcription	Liver	Liver
6	chr7:138290200-138293800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:138291000-138291400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:138291000-138294400	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:138291200-138291400	ZNF genes & repeats	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links