Variant report

Variant	rs12667799
Chromosome Location	chr7:147677076-147677077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10500195	0.86[AMR][1000 genomes]
rs10952718	0.86[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10952720	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10952721	0.80[CEU][hapmap];1.00[YRI][hapmap]
rs11766926	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11773362	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12055952	0.81[CEU][hapmap]
rs12532921	0.83[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12534783	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12537012	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12539260	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs12665922	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12670399	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12671605	1.00[YRI][hapmap]
rs12674208	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs13229141	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13230414	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13243208	0.94[CEU][hapmap]
rs16882145	1.00[YRI][hapmap]
rs16883782	0.82[CEU][hapmap]
rs17133865	0.82[CEU][hapmap]
rs17170749	0.80[CEU][hapmap]
rs17170796	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs1922879	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1962426	0.91[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2373281	0.91[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]
rs2373283	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2373285	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2373289	0.90[CEU][hapmap]
rs2710095	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs35532322	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4725756	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4725761	1.00[YRI][hapmap]
rs4726900	0.85[CEU][hapmap]
rs4726906	0.85[CEU][hapmap]
rs6960266	1.00[YRI][hapmap]
rs757695	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs7792732	0.82[CEU][hapmap]
rs9640249	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147676000-147678200	Weak transcription	Fetal Lung	lung

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