Variant report

Variant	rs12668708
Chromosome Location	chr7:138092362-138092363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10246196	0.81[CEU][hapmap]
rs10250362	0.87[AMR][1000 genomes]
rs10259728	0.81[AMR][1000 genomes]
rs12668679	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs17169596	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17169597	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2353346	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2883142	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4728434	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4728435	0.86[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs4732315	0.87[CEU][hapmap]
rs4732316	0.82[CEU][hapmap]
rs4732317	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55924435	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62491063	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs62491064	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62491077	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62491079	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138085200-138092600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:138091600-138094000	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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