Variant report

Variant	rs12668896
Chromosome Location	chr7:104612918-104612919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104611844..104613702-chr7:104653954..104656323,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000005483	Chromatin interaction
ENSG00000239569	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10232798	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10274325	0.86[ASN][1000 genomes]
rs13239438	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2073972	1.00[AFR][1000 genomes]
rs35472599	0.83[AMR][1000 genomes]
rs60137855	0.87[AFR][1000 genomes]
rs61192398	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104584600-104619000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:104587200-104623600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:104598000-104619800	Weak transcription	Primary T cells from cord blood	blood
4	chr7:104598000-104621600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:104598200-104620800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr7:104598200-104621400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr7:104598200-104623000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:104599000-104617200	Weak transcription	Gastric	stomach
9	chr7:104601800-104622800	Weak transcription	Thymus	Thymus
10	chr7:104602600-104614400	Weak transcription	Placenta	Placenta
11	chr7:104604600-104620200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:104604800-104613200	Weak transcription	Left Ventricle	heart
13	chr7:104604800-104614000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:104604800-104617200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr7:104605000-104616800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:104605200-104614000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:104605400-104614400	Weak transcription	Fetal Kidney	kidney
18	chr7:104605600-104614000	Weak transcription	Fetal Stomach	stomach
19	chr7:104606600-104622000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr7:104607200-104615200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:104608200-104614000	Weak transcription	Aorta	Aorta
22	chr7:104608200-104617000	Weak transcription	Lung	lung
23	chr7:104608400-104613400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr7:104608400-104614800	Weak transcription	Pancreas	Pancrea
25	chr7:104608400-104623000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr7:104609000-104614400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr7:104610800-104615200	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr7:104611000-104614000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:104611600-104613000	Enhancers	Brain Substantia Nigra	brain
30	chr7:104611600-104614000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr7:104611600-104614200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:104611600-104614200	Enhancers	NHDF-Ad	bronchial
33	chr7:104611600-104614400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:104611600-104615200	Enhancers	NHLF	lung
35	chr7:104611600-104615200	Enhancers	Osteobl	bone
36	chr7:104611800-104613200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr7:104611800-104613200	Enhancers	Stomach Smooth Muscle	stomach
38	chr7:104611800-104614000	Enhancers	NHEK	skin
39	chr7:104611800-104614200	Enhancers	HUVEC	blood vessel
40	chr7:104611800-104615200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:104611800-104615200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:104611800-104615200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:104611800-104615200	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr7:104611800-104615200	Enhancers	Stomach Mucosa	stomach
45	chr7:104611800-104615200	Enhancers	HMEC	breast
46	chr7:104611800-104617000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr7:104612000-104613000	Enhancers	Brain Cingulate Gyrus	brain
48	chr7:104612000-104613000	Enhancers	Duodenum Mucosa	Duodenum
49	chr7:104612000-104613400	Enhancers	HSMMtube	muscle
50	chr7:104612000-104614000	Enhancers	Cortex derived primary cultured neurospheres	brain

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