Variant report

Variant	rs12671824
Chromosome Location	chr7:147195038-147195039
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:147190883..147193448-chr7:147193743..147195946,2	K562	blood:
2	chr7:147189869..147191516-chr7:147192793..147195563,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10236878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10236883	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs10242834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10245813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10245926	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10258017	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10259368	0.82[JPT][hapmap];0.87[YRI][hapmap]
rs10266867	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10282302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11982152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12111800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12112731	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12113038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1534553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16883526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs16883529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1830342	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1919190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1919191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2107855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2107856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2107857	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2141388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2141389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2222764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2286125	0.81[JPT][hapmap];0.95[YRI][hapmap]
rs2373099	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2373100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2888489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2888490	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2888491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4725736	0.81[JPT][hapmap]
rs4725739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4725740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4725743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4726877	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6956932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6961608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6973308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6978820	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7778685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv15215	chr7:147194510-147195154	Inactive region	Chromatin interactive region	n/a	n/a	n/a
3	nsv824372	chr7:147194834-147195448	Inactive region	Chromatin interactive region	n/a	n/a	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links