Variant report

Variant	rs12672828
Chromosome Location	chr7:104499350-104499351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10226913	0.91[EUR][1000 genomes]
rs10226989	0.89[EUR][1000 genomes]
rs10267013	0.89[EUR][1000 genomes]
rs10953453	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12055895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17706774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2005888	0.82[EUR][1000 genomes]
rs2192931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2385466	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3955473	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4382394	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4571661	0.82[EUR][1000 genomes]
rs4730052	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4730053	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59264482	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59335487	0.85[EUR][1000 genomes]
rs59814386	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62485395	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62485396	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6466028	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958846	0.87[EUR][1000 genomes]
rs741323	0.81[EUR][1000 genomes]
rs9885984	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104476400-104503000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
3	chr7:104493400-104500800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:104494000-104502800	Weak transcription	Fetal Intestine Large	intestine
5	chr7:104496800-104500800	Strong transcription	Fetal Intestine Small	intestine
6	chr7:104497600-104499400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr7:104497600-104499400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:104497600-104499400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr7:104497800-104499400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr7:104498400-104499400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:104498600-104499400	Enhancers	Primary T cells from cord blood	blood
12	chr7:104498600-104499400	Enhancers	Primary hematopoietic stem cells	blood
13	chr7:104498600-104499400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:104498800-104500200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr7:104499000-104499400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:104499000-104499400	Enhancers	GM12878-XiMat	blood

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