Variant report

Variant	rs12672896
Chromosome Location	chr7:147362512-147362513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17248680	0.85[CEU][hapmap]
rs17327331	0.87[CEU][hapmap]
rs17327575	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17327617	0.81[CHB][hapmap]
rs4314574	0.86[ASW][hapmap];0.87[CEU][hapmap];0.88[GIH][hapmap];0.82[MKK][hapmap]
rs55685815	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56081512	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs700316	0.87[TSI][hapmap]
rs73741210	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73741215	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12672896	NOS3	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147362000-147362600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:147362200-147362800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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