Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126651745-126656082..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo
2	7:126651745-126656082..7:126756671-126761022	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000179603	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1018854	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10954141	1.00[CEU][hapmap]
rs1156652	1.00[CEU][hapmap]
rs1156653	1.00[CEU][hapmap]
rs1156654	1.00[CEU][hapmap]
rs12535891	1.00[CEU][hapmap]
rs13229907	0.83[EUR][1000 genomes]
rs1361964	1.00[CEU][hapmap]
rs1419435	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1419436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1419437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs1419445	1.00[CEU][hapmap]
rs1894729	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs2237778	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2237783	1.00[CEU][hapmap]
rs2254417	1.00[CEU][hapmap]
rs2299523	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2299529	1.00[CEU][hapmap]
rs2896389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3808123	1.00[CEU][hapmap]
rs4731343	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6467110	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758132	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759562	chr7:126494789-126677843	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427805	chr7:126494789-126677843	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv608379	chr7:126643692-126657545	Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv971543	chr7:126653280-126657192	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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