Variant report

Variant	rs12676924
Chromosome Location	chr8:57852818-57852819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1046636	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1046643	1.00[ASW][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs10958510	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12679713	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs13257046	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs13265996	0.95[EUR][1000 genomes]
rs13272145	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs13278306	0.95[EUR][1000 genomes]
rs13278878	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs34162009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35400916	0.93[EUR][1000 genomes]
rs3739364	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs4738557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56922495	0.95[EUR][1000 genomes]
rs62511997	0.85[EUR][1000 genomes]
rs62511999	0.95[EUR][1000 genomes]
rs62512025	0.95[EUR][1000 genomes]
rs71519474	0.95[EUR][1000 genomes]
rs925150	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:57852800-57853000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:57852800-57853200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:57852800-57853400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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