Variant report

Variant	rs12679278
Chromosome Location	chr8:110879189-110879190
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10090049	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10096412	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11997465	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12675834	0.88[ASN][1000 genomes]
rs1394941	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs1394942	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1505650	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1505651	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1505652	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1505653	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1587943	0.96[ASN][1000 genomes]
rs16880109	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs16880131	0.99[ASN][1000 genomes]
rs16880142	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16880145	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16880151	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1809991	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2129035	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2350411	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4389901	0.86[ASN][1000 genomes]
rs4585726	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735141	0.99[ASN][1000 genomes]
rs4735142	0.99[ASN][1000 genomes]
rs62527996	0.88[ASN][1000 genomes]
rs62527997	0.88[ASN][1000 genomes]
rs62527998	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62527999	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62528000	0.88[ASN][1000 genomes]
rs62528031	0.88[ASN][1000 genomes]
rs62528032	0.88[ASN][1000 genomes]
rs62528037	0.84[ASN][1000 genomes]
rs6469287	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7000312	0.98[ASN][1000 genomes]
rs7013309	0.99[ASN][1000 genomes]
rs7814174	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7824024	0.88[ASN][1000 genomes]
rs7824730	0.98[ASN][1000 genomes]
rs7833816	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834319	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845779	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs905962	0.98[ASN][1000 genomes]
rs9773536	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033321	chr8:110826297-111131801	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1019284	chr8:110866196-111221890	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831421	chr8:110874634-111038295	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110877400-110879200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:110878200-110879200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr8:110879000-110879400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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